Another few comments (sorry to be monopolising the thread here).

Anybody who wants can easily disable the icons they have put in folders by going into /usr/share/applications and (as root) renaming the corresponding .desktop file (AFTER putting the app in the folder) to something else, e.g. skype.desktop to skype.desktop.off. That won't affect the visibility of the icon in the folder. Of course this requires you to be comfortable with command line, modifying system files, etc, and I am sure Marxian will get around to implementing this automatically quite soon.

Feature request: I would like to modify the names of the Folders, *and* the names of the applications I've moved into folders. Where are the files located that will enable me to do that? I tried adding a new .desktop file in /opt/meefolders/desktop but it was ignored by the Meefolders app. EDIT: I found a workaround. I can change the names of applications by editing the .desktop files in /usr/share/applications BEFORE adding them to the folder, and I can change the names of the folders by editing their .desktop files in /home/user/.local/share/applications AFTER creating that folder.