I am not applying tweak F and also I clearly attributed this to tweak A3 - I apply A3 + refresh to properly working configuration and position of lpsmagic gets screwed up. I apply A4 + refresh and it gets restored. Again apply A3 and again position is changed, reverting the file I mentioned and position restored. So it is definitely "speedup transitions" mod. Maybe it is accidental - check your script.

Thanks,
Serge.