It's not a permissions thing, it's not a swype thing either.

Short explanation.

When the application shows, I read all the enabled layouts and write them to a file (oldEnabledKb) so that I can load them later, when the application goes to the background. MeeGo though triggered the background event once on application start, so whatever is stored in the file gets loaded.

(in your case, and anybody's after fresh install, nothing, as the file was empty -or non existent-. In my case my default keyboards because the file had my default keyboards.
They got written there when I changed them while the application was open, while testing, I backgrounded the application instead of closing it and tested different layouts. When you call the app from background the 'extra' restore does not happen so my file was not empty)

So the program loads the keyboards saved in the file just before saving them again to load the math keyboards. Thus it enters in a loop where the file is always the same, except if you change layouts while the app is running.

Anyway, I am attaching a new version that hopefully resolves the situation. I kindly ask you to test it.

P.S. the application does not work in PR1.1 because of a theming option. If anybody is still on PR1.1 please speak up and I can upload a PR1.1 variant.