Im having some really odd problems with my N9. My device has been rebooted and reflashed a LOT of times.

But even after a reflash an hour ago, my device straight away has the same problems that have popped up recently.

I did not restore any backups.
Not incepted, only developer mode activated and untrusted sources.
N9qtweak
file manager


Problems Im having:

- Icons for some apps that I install are green squircles.
- Unable to set permissions (chmod +x )


Any help is appreciated.