"flasher-3.5 -F RX-51_2009SE_1.2009.42-11.003_PR_COMBINED_003_ARM.bin -f -R"
That's the firmware image. Just checking, did you really mean to download the "Middle East and North Africa" version or did you just get the highest-numbered one? The eMMC image is RX-51_2009SE_1.2009.41-1.VANILLA_PR_EMMC_MR0_ARM.bin. You should flash both the firmware and eMMC images.