My biggest complaint with py2deb was I couldn't get it to properly maintain a changelog file in the right format. I never even managed to try the bugtracker and app manager stuff in it because I gave up after wanting to keep my previous changelog stuff while adding new entries. I had a big string with \n's and stuff and it just didn't output right.
changelog = """some info some more info, etc yet more info"""
some info some more info, etc yet more info
changelog = ("Some info\n" "some more info, etc\n" " yet more info")