Yamakasi: Yes, you can manually edit the .menu files in /home/user/.config/menus/submenus/ (there's also a hildon.menu file in the menus folder, but that can be mostly left alone unless you want to do other stuff - for instance, I added Deinstall-Kernel-Power to the exclude tag to hide it - but it's not necessary, and if you mess up it can kill your menu in general so you'll have to remember what changes you made and fix it again).

However, manual editing is a pain in the ***. That's what I'm doing right now, but it's unpleasant. Really.

dscobsct: I would experiment, but at this point I already edited my .menu files around and installed a bunch of crap that wasn't there before my reflash, so it's probably a lost cause to track down the bug if it's merely in the .menu and .desktop files. If it's somewhere else in a ApMeFo folder, I may be able to fix it... Will look into it.