After updating to 1.3 it appears my home directory is completely full according to the app manager and Conky (which shows 56MB free out of 2gig).

I'm assuming home is /home/opt?

Nokia-N900-51-1:~# du -h -d 1 /home
16.0k /home/lost+found
8.0k /home/.apt-archive-cache
18.7M /home/home
1.2G /home/opt
11.9G /home/user
13.1G /home

Theres around 600 Mb unaccounted somewhere if it is?