IIRC maemo wiki firmware flashing guide instructs you to first flash emmc with flasher without -R switch and then with it. Also guide says that you should avoid using 64-bit windows. Looking what you have posted makes me wonder that have you really read wiki guide _completely_ before doing anything.

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also your problems list is way to vague and useless to begin any debugging.Please be specific!

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from where you have installed apps?testing or devel?